Mar26,2021 10:35:04(JST) fastq_202103261034413779341_94b7f45994703bf59cfbd3b22bc5a00f processing start: 1000000reads (100%)
Mar26,2021 10:37:12(JST) adapter removal & quality trimming finished: 998955reads (99.00%)
Mar26,2021 10:37:22(JST) removing contaminants finished: 998955reads (99.00%)
Mar26,2021 10:37:43(JST) host genome subtract finished: 3051reads (.3000%) * host genome: 995904reads (99.5900%)
Mar26,2021 10:38:01(JST) kraken2 finished: 2051reads (67.2200% of karaken2 target) * un-classified read: 1000reads (.1000%)
Mar26,2021 10:39:14(JST) RAPID REPORT finished (0:4:10)
Mar26,2021 10:54:37(JST) blastn finished: blast hits 586reads (.0500%) * 414reads were unknown origin (.0400%)
Mar26,2021 10:56:14(JST) PATHOGEN SEARCH finished (0:21:10)
Mar26,2021 10:56:34(JST) reference genome search finished.
>1st_Hit microbe reference genome
Not applicable
>1st_Hit microbe representative genome
Considering the following 1 assemblies for download:
GCF_900475405.1	Stenotrophomonas maltophilia
Mar26,2021 10:56:39(JST) Calculation of coverage percentage finished.
Mar26,2021 10:58:02(JST) Antimicrobial resistance analysis finished.
Mar26,2021 10:58:03(JST) All PATHDET processes finished!
total processing time 0:22:59
PATHDET(ver.1.0)
