May06,2021 12:51:22(JST) fastq_202105061233322818260_7bb16b5ea08b630ae3b689782ef1ecd9 processing start: 288509reads (100%)
May06,2021 13:38:15(JST) Quality Check finished: 288509reads (100.00%)
May06,2021 13:40:25(JST) removing contaminants finished: 287535reads (99.00%)
May06,2021 13:47:01(JST) host genome subtract finished: 9227reads (3.1900%) * host genome: 278308reads (96.4600%)
210506135149 pathogen screening(RefSeq release 88) finished
May06,2021 13:54:51(JST) kraken2 finished: 4022reads (43.5800% of karaken2 target) * un-classified read: 5205reads (1.8000%)
May06,2021 13:57:09(JST) RAPID REPORT finished (1:5:47)
May06,2021 16:31:50(JST) blastn finished: blast hits 735reads (.2500%) * 4470reads were unknown origin (1.5400%)
May06,2021 16:34:07(JST) PATHOGEN SEARCH finished (3:42:45)
May06,2021 16:34:24(JST) reference genome search finished.
>1st_Hit microbe reference genome
Considering the following 2 assemblies for download:
GCF_000008865.2	Escherichia coli O157:H7 str. Sakai
GCF_000005845.2	Escherichia coli str. K-12 substr. MG1655
May06,2021 16:34:29(JST) Calculation of coverage percentage finished.
May06,2021 16:37:08(JST) Antimicrobial resistance analysis finished.
May06,2021 16:37:14(JST) All PATHDET processes finished!
total processing time 3:45:52
PATHDET_for_Long-read_Seq(ver.2.0)
